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    Y71H2B.5 Aminotran_5 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175380, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y71H2B.5
    Official Full Name
    Aminotran_5 domain-containing protein
    Primary source
    WormBase:WBGene00022195
    Locus tag
    CELE_Y71H2B.5
    See related
    AllianceGenome:WB:WBGene00022195
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable metal ion binding activity and tRNA binding activity. Predicted to be involved in tRNA modification. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y71H2B.5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    10
    Sequence:
    Chromosome: III; NC_003281.10 (2608017..2618866)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Mediator of RNA polymerase II transcription subunit 19 Neighboring gene ncRNA Neighboring gene BTB domain-containing protein Neighboring gene Lipoprotein Neighboring gene Serine/threonine-protein phosphatase 4 regulatory subunit ppfr-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Aminotran_5 domain-containing protein
    NP_497589.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      2608017..2618866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065188.7 → NP_497589.3  Aminotran_5 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497589.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N4F1
      Conserved Domains (2) summary
      COG0520
      Location:56 → 493
      CsdA; Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]
      cd01993
      Location:721 → 901
      Alpha_ANH_like_II; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...
    Nucleotide Protein
    Heading Accession and Version

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