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    LOC17875991 uncharacterized LOC17875991 [ Capsella rubella ]

    Gene ID: 17875991, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17875991
    Gene description
    uncharacterized LOC17875991
    Locus tag
    CARUB_v10026036mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17875991 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (8608013..8611851, complement)

    NW_006238916.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 20 Neighboring gene uncharacterized LOC17876417 Neighboring gene transcription termination factor MTERF9, chloroplastic Neighboring gene pectinesterase QRT1 Neighboring gene uncharacterized LOC17875214 Neighboring gene uncharacterized LOC17876157

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238916 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC17875991

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238916.1 Reference Caprub1_0

      Range
      8608013..8611851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023779776.1 → XP_023635544.1  uncharacterized protein LOC17875991

      UniProtKB/TrEMBL
      R0EV90
      Conserved Domains (3) summary
      smart00743
      Location:469 → 523
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 459
      Agenet; Agenet domain

    2. XM_023779773.1 → XP_023635541.1  uncharacterized protein LOC17875991

      UniProtKB/TrEMBL
      R0EV90
      Conserved Domains (3) summary
      smart00743
      Location:469 → 523
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 459
      Agenet; Agenet domain

    3. XM_006280077.2 → XP_006280139.1  uncharacterized protein LOC17875991

      See identical proteins and their annotated locations for XP_006280139.1

      UniProtKB/TrEMBL
      R0EV90
      Conserved Domains (3) summary
      smart00743
      Location:469 → 523
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 459
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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