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    fig-1 C6 domain-containing protein;ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179523, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fig-1
    Official Full Name
    C6 domain-containing protein;ShKT domain-containing protein
    Primary source
    WormBase:WBGene00009968
    Locus tag
    CELE_F53B7.5
    See related
    AllianceGenome:WB:WBGene00009968
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Is expressed in amphid sheath cell and phasmid sheath cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See fig-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    22
    Sequence:
    Chromosome: V; NC_003283.11 (10970345..10981213, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene putative elongation factor 1-gamma Neighboring gene ncRNA Neighboring gene protein of unknown function DB domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Glia are essential for sensory organ function in C. elegans. Bacaj T, et al. Science, 2008 Oct 31. PMID 18974354, Free PMC Article
    2. Caenorhabditis elegans homologue of Prox1/Prospero is expressed in the glia and is required for sensory behavior and cold tolerance. Kage-Nakadai E, et al. Genes Cells, 2016 Sep. PMID 27402188
    3. Impairing one sensory modality enhances another by reconfiguring peptidergic signalling in Caenorhabditis elegans. Valperga G, et al. Elife, 2022 Feb 24. PMID 35201977, Free PMC Article
    4. The glia of Caenorhabditis elegans. Oikonomou G, et al. Glia, 2011 Sep. PMID 21732423, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    C6 domain-containing protein;ShKT domain-containing protein
    NP_001122946.2
    • Confirmed by transcript evidence
    NP_001122947.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      10970345..10981213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129474.4 → NP_001122946.2  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122946.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H9G2W3
      Conserved Domains (1) summary
      smart00209
      Location:63 → 112
      TSP1; Thrombospondin type 1 repeats

    2. NM_001129475.3 → NP_001122947.2  C6 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EGB4
      Conserved Domains (5) summary
      smart00209
      Location:2823 → 2872
      TSP1; Thrombospondin type 1 repeats
      smart01048
      Location:1637 → 1728
      C6; This domain of unknown function is found in a C. elegans protein
      pfam01681
      Location:962 → 1037
      C6; C6 domain
      NF033201
      Location:870 → 946
      Vip_LPXTG_Lm; cell invasion LPXTG protein Vip
      cl07834
      Location:2461 → 2551
      C6; C6 domain
    Nucleotide Protein
    Heading Accession and Version

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