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    LOC18034232 protein NLP2 [ Citrus x clementina ]

    Gene ID: 18034232, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18034232
    Gene description
    protein NLP2
    Locus tag
    CICLE_v10027765mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Citrus x clementina
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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    Genomic context

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    See LOC18034232 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262022.1 (267244..272872, complement)

    NW_006262022.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g17140 Neighboring gene U1 spliceosomal RNA Neighboring gene zinc finger protein ZAT3 Neighboring gene uncharacterized LOC18035079

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006262022 Unplaced Scaffold Reference Citrus_clementina_v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NLP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Citrus_clementina_v1.0

    Genomic

    1. NW_006262022.1 Reference Citrus_clementina_v1.0

      Range
      267244..272872 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024179298.1 → XP_024035066.1  protein NLP2

      UniProtKB/TrEMBL
      V4U8W2
      Conserved Domains (2) summary
      cd06407
      Location:848 → 928
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:627 → 675
      RWP-RK; RWP-RK domain

    2. XM_006422371.2 → XP_006422434.1  protein NLP2

      See identical proteins and their annotated locations for XP_006422434.1

      UniProtKB/TrEMBL
      V4U8W2
      Conserved Domains (2) summary
      cd06407
      Location:848 → 928
      PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
      pfam02042
      Location:627 → 675
      RWP-RK; RWP-RK domain
    Nucleotide Protein
    Heading Accession and Version

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