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    LOC18100261 protein ecdysoneless homolog [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 18100261, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC18100261
    Gene description
    protein ecdysoneless homolog
    Locus tag
    POPTR_006G134400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
    Also known as
    AT5G65490
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    Genomic context

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    See LOC18100261 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (11032330..11037933)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (11073767..11079376)

    Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene protein MODIFIER OF SNC1 11 Neighboring gene probable protein phosphatase 2C 38 Neighboring gene alpha-aminoadipic semialdehyde synthase Neighboring gene pectinesterase/pectinesterase inhibitor PPE8B Neighboring gene probable pectinesterase/pectinesterase inhibitor 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ecdysoneless homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      11032330..11037933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006381478.3 → XP_006381540.1  protein ecdysoneless homolog

      See identical proteins and their annotated locations for XP_006381540.1

      UniProtKB/TrEMBL
      U5GD36
      Conserved Domains (1) summary
      pfam07093
      Location:19 → 602
      SGT1; SGT1 protein

    RNA

    1. XR_002982631.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials