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    LOC18434621 WASH complex subunit 3 [ Amborella trichopoda ]

    Gene ID: 18434621, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18434621
    Gene description
    WASH complex subunit 3
    Locus tag
    AMTR_s00016p00256020
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18434621 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498507.1 (7011600..7018264)

    NW_006498507.1Genomic Context describing neighboring genes Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene uncharacterized LOC18434619 Neighboring gene casein kinase II subunit beta-1 Neighboring gene 40S ribosomal protein S21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006498507.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WASH complex subunit 3
    Names
    WASH complex subunit CCDC53

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006498507.1 Reference AMTR1.0 Primary Assembly

      Range
      7011600..7018264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020667244.1 → XP_020522903.1  WASH complex subunit 3 isoform X1

      Conserved Domains (1) summary
      pfam10152
      Location:32 → 166
      DUF2360; Predicted coiled-coil domain-containing protein (DUF2360)

    2. XM_006844688.3 → XP_006844751.1  WASH complex subunit 3 isoform X2

      See identical proteins and their annotated locations for XP_006844751.1

      UniProtKB/TrEMBL
      W1PFK6
      Conserved Domains (1) summary
      pfam10152
      Location:32 → 182
      DUF2360; Predicted coiled-coil domain-containing protein (DUF2360)
    Nucleotide Protein
    Heading Accession and Version

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