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    LOC18434656 UPF0664 stress-induced protein C29B12.11c [ Amborella trichopoda ]

    Gene ID: 18434656, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18434656
    Gene description
    UPF0664 stress-induced protein C29B12.11c
    Locus tag
    AMTR_s00016p00259850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18434656 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006498507.1 (7524870..7530005)

    NW_006498507.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18434653 Neighboring gene pentatricopeptide repeat-containing protein At5g46460, mitochondrial Neighboring gene probable glycosyltransferase At3g07620 Neighboring gene probable 2-oxoglutarate-dependent dioxygenase JRG21 Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006498507.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UPF0664 stress-induced protein C29B12.11c

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006498507.1 Reference AMTR1.0 Primary Assembly

      Range
      7524870..7530005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006844719.3 → XP_006844782.1  UPF0664 stress-induced protein C29B12.11c

      See identical proteins and their annotated locations for XP_006844782.1

      UniProtKB/TrEMBL
      W1P985
      Conserved Domains (1) summary
      cd13214
      Location:29 → 134
      PH-GRAM_WBP2; WW binding protein 2 (WB2) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    Nucleotide Protein
    Heading Accession and Version

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