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    LOC18442634 pectinesterase [ Amborella trichopoda ]

    Gene ID: 18442634, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18442634
    Gene description
    pectinesterase
    Locus tag
    AMTR_s00033p00227800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18442634 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006499858.1 (4819685..4822441, complement)

    NW_006499858.1Genomic Context describing neighboring genes Neighboring gene putative UDP-rhamnose:rhamnosyltransferase 1 Neighboring gene BEACH domain-containing protein B Neighboring gene serine/threonine-protein kinase CTR1 Neighboring gene uncharacterized LOC18442636

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006499858.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006499858.1 Reference AMTR1.0 Primary Assembly

      Range
      4819685..4822441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006852849.3 → XP_006852911.2  pectinesterase

      Conserved Domains (3) summary
      PLN02745
      Location:26 → 596
      PLN02745; Putative pectinesterase/pectinesterase inhibitor
      cd15798
      Location:97 → 248
      PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
      cl01911
      Location:294 → 581
      Pectinesterase; Pectinesterase
    Nucleotide Protein
    Heading Accession and Version

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