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    F45E1.4 Phosphoglycolate phosphatase [ Caenorhabditis elegans ]

    Gene ID: 185793, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F45E1.4
    Official Full Name
    Phosphoglycolate phosphatase
    Primary source
    WormBase:WBGene00018465
    Locus tag
    CELE_F45E1.4
    See related
    AllianceGenome:WB:WBGene00018465
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable phosphoglycolate phosphatase activity. Predicted to be involved in DNA repair. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F45E1.4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (7985979..7988981)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Rhodanese domain-containing protein Neighboring gene Histone H3.3 type 1 Neighboring gene SH3 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables phosphoglycolate phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA repair IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Phosphoglycolate phosphatase
    NP_509345.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      7985979..7988981
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076944.3 → NP_509345.2  Phosphoglycolate phosphatase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509345.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      D7SFJ0
      Conserved Domains (2) summary
      cd01427
      Location:141 → 248
      HAD_like; Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, ...
      COG0546
      Location:50 → 276
      Gph; Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version

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