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    Y71F9AL.12 DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190588, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Y71F9AL.12
    Official Full Name
    DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein
    Primary source
    WormBase:WBGene00022117
    Locus tag
    CELE_Y71F9AL.12
    See related
    AllianceGenome:WB:WBGene00022117
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y71F9AL.12 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (2870141..2875291, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Plasma membrane proteolipid 3 Neighboring gene ncRNA Neighboring gene RING-type E3 ubiquitin transferase Neighboring gene Large ribosomal subunit protein uL1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    DUF3306 domain-containing protein;Increased recombination centers protein 6;Pre-rRNA-processing protein TSR2 homolog;UAE_UbL domain-containing protein
    NP_001360592.1
    • Partially confirmed by transcript evidence
    NP_001360593.1
    • Confirmed by transcript evidence
    NP_001360594.1
    • Confirmed by transcript evidence
    NP_001360595.1
    • Confirmed by transcript evidence
    NP_001360596.1
    • Confirmed by transcript evidence
    NP_001360597.1
    • Confirmed by transcript evidence
    NP_001360598.1
    • Confirmed by transcript evidence
    NP_491060.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      2870141..2875291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058659.6 → NP_491060.3  Increased recombination centers protein 6 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_491060.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N4I5

    2. NM_001373761.3 → NP_001360592.1  Increased recombination centers protein 6 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0III5

    3. NM_001373762.3 → NP_001360595.1  Increased recombination centers protein 6 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IJT8

    4. NM_001373764.2 → NP_001360596.1  UAE_UbL domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IJP4

    5. NM_001373765.2 → NP_001360593.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IKZ6

    6. NM_001373766.2 → NP_001360594.1  Pre-rRNA-processing protein TSR2 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0ILF5

    7. NM_001373767.2 → NP_001360597.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IK83

    8. NM_001373768.2 → NP_001360598.1  DUF3306 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IMX7
    Nucleotide Protein
    Heading Accession and Version

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