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    Msantd5l Myb/SANT DNA binding domain containing 5 like [ Mus musculus (house mouse) ]

    Gene ID: 193286, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Msantd5lprovided by MGI
    Official Full Name
    Myb/SANT DNA binding domain containing 5 likeprovided by MGI
    Primary source
    MGI:MGI:3039622
    See related
    Ensembl:ENSMUSG00000045942 AllianceGenome:MGI:3039622
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930503F14
    Summary
    Orthologous to human MSANTD5 (Myb/SANT DNA binding domain containing 5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 110.8) See more
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    Genomic context

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    See Msantd5l in Genome Data Viewer
    Location:
    11 B1.3; 11 31.02 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51144472..51154489, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51253645..51263662, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene pluripotency associated transcript 20 Neighboring gene Myb/SANT DNA binding domain containing 5 Neighboring gene STARR-positive B cell enhancer ABC_E5223 Neighboring gene CDC like kinase 4 Neighboring gene collagen, type XXIII, alpha 1 Neighboring gene STARR-positive B cell enhancer mm9_chr11:51347850-51348150 Neighboring gene STARR-positive B cell enhancer ABC_E6980 Neighboring gene STARR-seq mESC enhancer starr_29416 Neighboring gene STARR-positive B cell enhancer ABC_E3947 Neighboring gene 5-phosphohydroxy-L-lysine phospholyase Neighboring gene heterogeneous nuclear ribonucleoprotein A/B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC193286

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358279.1 → NP_001345208.1  uncharacterized protein LOC193286 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL645907
      Consensus CDS
      CCDS24650.1
      UniProtKB/TrEMBL
      Q8C601

    2. NM_001358280.1 → NP_001345209.1  uncharacterized protein LOC193286 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL645907, AW456486, BC049762
      Consensus CDS
      CCDS24650.1
      UniProtKB/TrEMBL
      Q8C601
      Related
      ENSMUSP00000061848.3, ENSMUST00000054226.3

    3. NM_001358281.1 → NP_001345210.1  uncharacterized protein LOC193286 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK076829, AW456486, BX516206
      UniProtKB/TrEMBL
      A0A338P6D5

    4. NM_001358282.1 → NP_001345211.1  uncharacterized protein LOC193286 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL645907
      Consensus CDS
      CCDS24650.1
      UniProtKB/TrEMBL
      Q8C601

    5. NM_001382322.1 → NP_001369251.1  uncharacterized protein LOC193286 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL645907
      UniProtKB/TrEMBL
      A0A338P6D5

    6. NM_177567.4 → NP_808235.1  uncharacterized protein LOC193286 isoform 1

      See identical proteins and their annotated locations for NP_808235.1

      Status: VALIDATED

      Source sequence(s)
      AK076829, AL645907, AW456486
      Consensus CDS
      CCDS24650.1
      UniProtKB/TrEMBL
      Q8C601
      Related
      ENSMUSP00000071085.4, ENSMUST00000065950.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      51144472..51154489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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