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    TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

    Gene ID: 202020, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TAPT1-AS1provided by HGNC
    Official Full Name
    TAPT1 antisense RNA 1 (head to head)provided by HGNC
    Primary source
    HGNC:HGNC:26832
    See related
    Ensembl:ENSG00000263327 AllianceGenome:HGNC:26832
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in skin (RPKM 2.1), colon (RPKM 1.8) and 25 other tissues See more
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    Genomic context

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    See TAPT1-AS1 in Genome Data Viewer
    Location:
    4p15.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (16226663..16258187)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (16208534..16240091)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (16228286..16259810)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374502 Neighboring gene uncharacterized LOC107986187 Neighboring gene transmembrane anterior posterior transformation 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15303 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15305 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15304 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21347 Neighboring gene ribosomal protein S21 pseudogene 4 Neighboring gene uncharacterized LOC124900674 Neighboring gene fibroblast growth factor binding protein 1 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:16362034-16363233 Neighboring gene uncharacterized LOC105374505 Neighboring gene zinc finger E-box binding homeobox 2 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107410
    2. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ39653

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027696.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC006427, AC110088
      Related
      ENST00000570786.1

    2. NR_027697.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3'-most exon compared to variant 1. This results in a shorter variant (2) compared to variant 1.
      Source sequence(s)
      AC006427, AC110088

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      16226663..16258187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      16208534..16240091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152684.1: Suppressed sequence

      Description
      NM_152684.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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