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    SPRG_20876 hypothetical protein [ Saprolegnia parasitica CBS 223.65 ]

    Gene ID: 24141872, updated on 17-May-2024

    Summary

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    Gene symbol
    SPRG_20876
    Gene description
    hypothetical protein
    Locus tag
    SPRG_20876
    See related
    FungiDB:SPRG_20876; VEuPathDB:SPRG_20876
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Saprolegnia parasitica CBS 223.65 (strain: CBS 223.65)
    Lineage
    Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Saprolegnia
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    11

    NW_012156450.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012156450.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. Jiang RH, et al. PLoS Genet, 2013 Jun. PMID 23785293, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type divalent copper transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in copper ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_012156450.1 Reference assembly

      Range
      210423..215328 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012349685.1 → XP_012205075.1  hypothetical protein SPRG_20876 [Saprolegnia parasitica CBS 223.65]

      See identical proteins and their annotated locations for XP_012205075.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A067C580
      Conserved Domains (8) summary
      COG2608
      Location:185 → 251
      CopZ; Copper chaperone CopZ [Inorganic ion transport and metabolism]
      cd00371
      Location:3 → 60
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02257
      Location:1028 → 1419
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      cl02553
      Location:1028 → 1139
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00122
      Location:388 → 624
      E1-E2_ATPase; E1-E2 ATPase
      pfam00443
      Location:1028 → 1418
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam00702
      Location:629 → 835
      Hydrolase; haloacid dehalogenase-like hydrolase
      pfam06839
      Location:1223 → 1263
      zf-GRF; GRF zinc finger
    Nucleotide Protein
    Heading Accession and Version

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