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    C33D9.6 Protein CASP [ Caenorhabditis elegans ]

    Gene ID: 259585, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C33D9.6
    Official Full Name
    Protein CASP
    Primary source
    WormBase:WBGene00007900
    Locus tag
    CELE_C33D9.6
    See related
    AllianceGenome:WB:WBGene00007900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in hypodermis; muscle cell; and ventral cord neurons. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C33D9.6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (8773989..8778145, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

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    Preferred Names
    Protein CASP
    NP_001263755.1
    • Confirmed by transcript evidence
    NP_001366747.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8773989..8778145 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001380383.2 → NP_001366747.1  Protein CASP [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18377
      Conserved Domains (1) summary
      TIGR02168
      Location:124 → 329
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001276826.3 → NP_001263755.1  Protein CASP [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263755.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      I7LHV5
    Nucleotide Protein
    Heading Accession and Version

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