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    PAN0_018c5621 high mobility group box [ Moesziomyces antarcticus ]

    Gene ID: 26306413, updated on 29-Dec-2023

    Summary

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    Gene symbol
    PAN0_018c5621
    Gene description
    high mobility group box
    Locus tag
    PAN0_018c5621
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Moesziomyces antarcticus (strain: JCM 10317, type-material: type material of Sporobolomyces antarcticus)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Moesziomyces
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    Genomic context

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    See PAN0_018c5621 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_014638992.1Genomic Context describing neighboring genes Neighboring gene sphingosine kinase Neighboring gene riboflavin biosynthesis protein RibD domain-containing protein Neighboring gene NEDD8 precursor Neighboring gene histidyl-tRNA synthetase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_014638992.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft Genome Sequence of the Yeast Pseudozyma antarctica Type Strain JCM10317, a Producer of the Glycolipid Biosurfactants, Mannosylerythritol Lipids. Saika A, et al. Genome Announc, 2014 Sep 25. PMID 25291760, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group box
    XP_014654336.1
    • top hit is XP_762172.1 originated in Ustilago maydis 521

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_014638992.1 Reference assembly

      Range
      138508..140561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014798850.1 → XP_014654336.1  high mobility group box [Moesziomyces antarcticus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A081CL48, A0A5C3FWT6
      Conserved Domains (1) summary
      cl00082
      Location:250 → 332
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein
    Heading Accession and Version