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    def peptide deformylase [ Vibrio fluvialis ]

    Gene ID: 29385530, updated on 3-Dec-2024

    Summary

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    Gene symbol
    def
    Gene description
    peptide deformylase
    Locus tag
    AL536_RS43040
    Gene type
    protein coding
    Organism
    Vibrio fluvialis (strain: ATCC 33809, nat-host: Homo sapiens, culture-collection: FDA:FDAARGOS_104, type-material: type strain of Vibrio fluvialis)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    AL536_20100
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    Genomic context

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    Location:
    chromosome: 2

    2 - NZ_CP014035.2Genomic Context describing neighboring genes Neighboring gene DNA-processing protein DprA Neighboring gene LysM peptidoglycan-binding domain-containing protein Neighboring gene methionyl-tRNA formyltransferase Neighboring gene 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP014035.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion. Meinnel T, et al. J Mol Biol, 1997 Apr 4. PMID 9126850

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    peptide deformylase
    WP_020332568.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP014035.2 Reference assembly

      Range
      2687789..2688301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_020332568.1 MULTISPECIES: peptide deformylase [Vibrio]

      See identical proteins and their annotated locations for WP_020332568.1

      UniProtKB/TrEMBL
      A0AAX2LRJ7, S7HUE1
      Conserved Domains (1) summary
      PRK00150
      Location:1 → 163
      def; peptide deformylase; Reviewed
    Nucleotide Protein
    Heading Accession and Version