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    Fsip1 fibrous sheath interacting protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296074, updated on 9-Dec-2024

    Summary

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    Symbol
    Fsip1provided by RGD
    Full Name
    fibrous sheath interacting protein 1provided by RGD
    Primary source
    RGD:1306874
    See related
    EnsemblRapid:ENSRNOG00000005888 AllianceGenome:RGD:1306874
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FSIP1 (fibrous sheath interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 75.3), Thymus (RPKM 22.0) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fsip1 in Genome Data Viewer
    Location:
    3q35
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (125528538..125671135, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (105074584..105217180, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (109877943..110021186, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101636 Neighboring gene uncharacterized LOC134486137 Neighboring gene thrombospondin 1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120101637 Neighboring gene G protein-coupled receptor 176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    fibrous sheath-interacting protein 1
    Names
    fibrous sheath-interacting protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013078.2 → NP_001013096.2  fibrous sheath-interacting protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      Q66H16
      Related
      ENSRNOP00000007808.7, ENSRNOT00000007808.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      125528538..125671135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104542.2 → XP_038960470.1  fibrous sheath-interacting protein 1 isoform X2

      Conserved Domains (1) summary
      pfam15554
      Location:36 → 437
      FSIP1; FSIP1 family

    2. XM_063283317.1 → XP_063139387.1  fibrous sheath-interacting protein 1 isoform X5

    3. XM_017591571.3 → XP_017447060.1  fibrous sheath-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I6GMA0
      Related
      ENSRNOP00000110934.1, ENSRNOT00000157272.1

    4. XM_039104540.2 → XP_038960468.1  fibrous sheath-interacting protein 1 isoform X1

      Conserved Domains (1) summary
      pfam15554
      Location:36 → 438
      FSIP1; FSIP1 family

    5. XM_039104543.2 → XP_038960471.1  fibrous sheath-interacting protein 1 isoform X6

      Conserved Domains (1) summary
      pfam15554
      Location:4 → 406
      FSIP1; FSIP1 family

    6. XM_039104544.2 → XP_038960472.1  fibrous sheath-interacting protein 1 isoform X6

      Conserved Domains (1) summary
      pfam15554
      Location:4 → 406
      FSIP1; FSIP1 family

    7. XM_039104541.2 → XP_038960469.1  fibrous sheath-interacting protein 1 isoform X3

      Related
      ENSRNOP00000097924.2, ENSRNOT00000102270.2
      Conserved Domains (1) summary
      pfam15554
      Location:36 → 438
      FSIP1; FSIP1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66H16.1 GenPept UniProtKB/Swiss-Prot:Q66H16

    Gene LinkOut

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