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    def peptide deformylase [ Pseudoalteromonas shioyasakiensis ]

    Gene ID: 29848187, updated on 3-Dec-2024

    Summary

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    Gene symbol
    def
    Gene description
    peptide deformylase
    Locus tag
    PASHI_RS03565
    Gene type
    protein coding
    Organism
    Pseudoalteromonas shioyasakiensis (strain: JCM 18891, type-material: type strain of Pseudoalteromonas shioyasakiensis)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas
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    Genomic context

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    NZ_LRUE01000006.1Genomic Context describing neighboring genes Neighboring gene Trk system potassium transporter TrkA Neighboring gene 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB Neighboring gene methionyl-tRNA formyltransferase Neighboring gene LysM peptidoglycan-binding domain-containing protein Neighboring gene DNA-processing protein DprA Neighboring gene DUF494 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_LRUE01000006.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion. Meinnel T, et al. J Mol Biol, 1997 Apr 4. PMID 9126850

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    peptide deformylase
    WP_054554770.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_LRUE01000006.1 Reference assembly

      Range
      51290..51799 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_054554770.1 MULTISPECIES: peptide deformylase [Pseudoalteromonas]

      UniProtKB/TrEMBL
      A0A0N8HIA8, A0A0Q0HRI4, A0A2D4ZH31, A0A4Q6JAS9, A0A5S3XXN4, A0AAX2TVS7
      Conserved Domains (1) summary
      PRK00150
      Location:1 → 163
      def; peptide deformylase; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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