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    Fam169a family with sequence similarity 169, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310013, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam169aprovided by RGD
    Official Full Name
    family with sequence similarity 169, member Aprovided by RGD
    Primary source
    RGD:1590893
    See related
    EnsemblRapid:ENSRNOG00000016505 AllianceGenome:RGD:1590893
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM169A (family with sequence similarity 169 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 138.7), Testes (RPKM 58.8) and 4 other tissues See more
    Orthologs
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    Genomic context

    See Fam169a in Genome Data Viewer
    Location:
    2q12
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (30115307..30175972)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (28384162..28441361)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (27884748..27941069)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485579 Neighboring gene uncharacterized LOC120100675 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene Neighboring gene NSA2 ribosome biogenesis factor Neighboring gene GTP dependent ribosome recycling factor mitochondrial 2 Neighboring gene hexosaminidase subunit beta

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    soluble lamin-associated protein of 75 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427646.1NP_001414575.1  soluble lamin-associated protein of 75 kDa

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      30115307..30175972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063281717.1XP_063137787.1  soluble lamin-associated protein of 75 kDa isoform X2

    2. XM_039103472.2XP_038959400.1  soluble lamin-associated protein of 75 kDa isoform X2

      UniProtKB/TrEMBL
      D3ZKX8
    3. XM_006231831.5XP_006231893.1  soluble lamin-associated protein of 75 kDa isoform X1

      See identical proteins and their annotated locations for XP_006231893.1

      UniProtKB/TrEMBL
      A0A8I6G2A6, D3ZKX8
      Related
      ENSRNOP00000078762.1, ENSRNOT00000109459.2
    4. XM_039103474.2XP_038959402.1  soluble lamin-associated protein of 75 kDa isoform X3

      UniProtKB/TrEMBL
      A6I519