U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Slc10a5 solute carrier family 10, member 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310230, updated on 27-Nov-2024

    Summary

    Official Symbol
    Slc10a5provided by RGD
    Official Full Name
    solute carrier family 10, member 5provided by RGD
    Primary source
    RGD:1306036
    See related
    EnsemblRapid:ENSRNOG00000067758 AllianceGenome:RGD:1306036
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Predicted to be located in membrane. Orthologous to human SLC10A5 (solute carrier family 10 member 5). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc10a5 in Genome Data Viewer
    Location:
    2q23
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (93364959..93366263)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (91457540..91458844)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (93669962..93671266)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 4C Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger AN1-type containing 1 Neighboring gene inositol monophosphatase 1 Neighboring gene uncharacterized LOC120093158

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables bile acid:sodium symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in bile acid and bile salt transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    sodium/bile acid cotransporter 5
    Names
    Na(+)/bile acid cotransporter 5
    solute carrier family 10 (sodium/bile acid cotransporter family), member 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025280.1NP_001020451.1  sodium/bile acid cotransporter 5 precursor

      See identical proteins and their annotated locations for NP_001020451.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ074435
      UniProtKB/Swiss-Prot
      Q4JLT5
      UniProtKB/TrEMBL
      A0A8I6G7T7
      Related
      ENSRNOP00000081321.1, ENSRNOT00000104668.2
      Conserved Domains (1) summary
      cl19217
      Location:152421
      SBF; Sodium Bile acid symporter family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      93364959..93366263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)