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    PPL_07613 DUF1740 family protein [ Polysphondylium pallidum PN500 ]

    Gene ID: 31363094, updated on 16-Nov-2023

    Summary

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    Gene symbol
    PPL_07613
    Gene description
    DUF1740 family protein
    Locus tag
    PPL_07613
    Gene type
    protein coding
    RNA name
    DUF1740 family protein
    RefSeq status
    PROVISIONAL
    Organism
    Polysphondylium pallidum PN500 (strain: PN500)
    Lineage
    Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium
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    Genomic context

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    See PPL_07613 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_008805094.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene zipper-like domain-containing protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008805094.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication. Heidel AJ, et al. Genome Res, 2011 Nov. PMID 21757610, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    DUF1740 family protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008805094.1 Reference assembly

      Range
      221648..225535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020578448.1 → XP_020431683.1  DUF1740 family protein [Polysphondylium pallidum PN500]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D3BGG2
      Conserved Domains (1) summary
      pfam08424
      Location:338 → 576
      NRDE-2; NRDE-2, necessary for RNA interference
    Nucleotide Protein
    Heading Accession and Version