U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Arxes1 adipocyte-related X-chromosome expressed sequence 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317409, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Arxes1provided by RGD
    Official Full Name
    adipocyte-related X-chromosome expressed sequence 1provided by RGD
    Primary source
    RGD:1563536
    See related
    AllianceGenome:RGD:1563536
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Spcs3
    Summary
    Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within fat cell differentiation. Predicted to be located in endoplasmic reticulum. Predicted to be part of signal peptidase complex. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Arxes1 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (103742157..103743676)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (98950530..98952049)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (106487872..106489391)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor associated sorting protein family member 3 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene tubulin polyglutamylase complex subunit 2, pseudogene 2 Neighboring gene adipocyte-related X-chromosome expressed sequence 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC109340

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within fat cell differentiation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein targeting to ER IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in signal peptide processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of signal peptidase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    signal peptidase complex subunit 3
    Names
    SPC22/23
    SPase 22 kDa subunit
    SPase 22/23 kDa subunit
    microsomal signal peptidase 22/23 kDa subunit
    microsomal signal peptidase 23 kDa subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024267.2 → NP_001019438.1  signal peptidase complex subunit 3

      See identical proteins and their annotated locations for NP_001019438.1

      Status: PROVISIONAL

      Source sequence(s)
      BC092634
      UniProtKB/Swiss-Prot
      Q568Z4
      UniProtKB/TrEMBL
      A6KT32
      Conserved Domains (1) summary
      pfam04573
      Location:4 → 173
      SPC22; Signal peptidase subunit

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      103742157..103743676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q568Z4.1 GenPept UniProtKB/Swiss-Prot:Q568Z4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials