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    ADAM20P1 ADAM metallopeptidase domain 20 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 317760, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ADAM20P1provided by HGNC
    Official Full Name
    ADAM metallopeptidase domain 20 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:20102
    See related
    Ensembl:ENSG00000290783 AllianceGenome:HGNC:20102
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C14orf55
    Expression
    Biased expression in testis (RPKM 1.5), skin (RPKM 0.2) and 9 other tissues See more
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    Genomic context

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    See ADAM20P1 in Genome Data Viewer
    Location:
    14q24.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (70468876..70483756, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (64674900..64689778, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (70935593..70950473, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene SYNJ2BP-COX16 readthrough Neighboring gene synaptojanin 2 binding protein Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:70883594-70884793 Neighboring gene uncharacterized LOC124903339 Neighboring gene MPRA-validated peak2189 silencer Neighboring gene ADAM metallopeptidase domain 21 Neighboring gene RNA, U6 small nuclear 659, pseudogene Neighboring gene uncharacterized LOC105370556 Neighboring gene ADAM metallopeptidase domain 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The identification of seven metalloproteinase-disintegrin (ADAM) genes from genomic libraries. Poindexter K, et al. Gene, 1999 Sep 3. PMID 10524237
    2. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • CTD-2540L5.4
    • metalloproteinase-disintegrin 1-2 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037933.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL357153, BC047939
      Related
      ENST00000556964.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      70468876..70483756 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      64674900..64689778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_002465.2: Suppressed sequence

      Description
      NG_002465.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

    2. NG_027289.1: Suppressed sequence

      Description
      NG_027289.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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