U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Tmem154 transmembrane protein 154 [ Mus musculus (house mouse) ]

    Gene ID: 320782, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tmem154provided by MGI
    Official Full Name
    transmembrane protein 154provided by MGI
    Primary source
    MGI:MGI:2444725
    See related
    Ensembl:ENSMUSG00000056498 AllianceGenome:MGI:2444725
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9930117H01Rik
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM154 (transmembrane protein 154). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in bladder adult (RPKM 13.5), spleen adult (RPKM 4.4) and 10 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tmem154 in Genome Data Viewer
    Location:
    3 F1; 3 37.7 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (84573499..84611882)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (84666192..84704575)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene tigger transposable element derived 4 Neighboring gene predicted gene, 46836 Neighboring gene STARR-seq mESC enhancer starr_08087 Neighboring gene STARR-seq mESC enhancer starr_08088 Neighboring gene STARR-positive B cell enhancer mm9_chr3:84457727-84458028 Neighboring gene STARR-positive B cell enhancer ABC_E1263 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84485598-84485953 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84535918-84536119 Neighboring gene predicted gene, 40079 Neighboring gene STARR-positive B cell enhancer ABC_E2072 Neighboring gene predicted gene, 35486

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177260.2NP_796234.1  transmembrane protein 154 precursor

      See identical proteins and their annotated locations for NP_796234.1

      Status: PROVISIONAL

      Source sequence(s)
      AK081441
      Consensus CDS
      CCDS38467.1
      UniProtKB/Swiss-Prot
      Q3TB17, Q3TCN6, Q3TD45, Q8C4Q9, Q8CB06
      Related
      ENSMUSP00000103310.2, ENSMUST00000107682.2
      Conserved Domains (1) summary
      pfam15102
      Location:24163
      TMEM154; TMEM154 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      84573499..84611882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)