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    CG16863 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34784, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG16863provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0028931
    Locus tag
    Dmel_CG16863
    See related
    AllianceGenome:FB:FBgn0028931
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BG:DS00797.6; Dmel\CG16863; DS00797.6
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in organism. Orthologous to human ZBED1 (zinc finger BED-type containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG16863 in Genome Data Viewer
    Location:
    34D1-34D1; 2-49 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (13790959..13793264)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (13790959..13793264)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene p38b MAP kinase Neighboring gene antisense RNA:CR44847 Neighboring gene uncharacterized protein Neighboring gene Engulfment ABC Transporter in the ovary Neighboring gene Secretory 71 Neighboring gene Carbonic anhydrase 1 Neighboring gene Adenosine deaminase, tRNA-specific 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. Aravind L. Trends Biochem Sci, 2000 Sep. PMID 10973053
    2. An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region. Ashburner M, et al. Genetics, 1999 Sep. PMID 10471707, Free PMC Article
    3. Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila. Bischof J, et al. Elife, 2018 Sep 24. PMID 30247122, Free PMC Article
    4. A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Shokri L, et al. Cell Rep, 2019 Apr 16. PMID 30995488, Free PMC Article
    5. A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development. Schertel C, et al. Genome Res, 2015 Apr. PMID 25568052, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG16863-PA
    CG16863-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      13790959..13793264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135830.5 → NP_609674.3  uncharacterized protein Dmel_CG16863, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609674.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYW8, Q9VJW2
      Related
      FBpp0080113

    2. NM_001042896.3 → NP_001036361.1  uncharacterized protein Dmel_CG16863, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036361.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E8Q6
      Conserved Domains (1) summary
      pfam02892
      Location:4 → 44
      zf-BED; BED zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0E8Q6 Q0E8Q6
    Q8SYW8 Q8SYW8

    Gene LinkOut

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