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    F38A5.2 TraB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565269, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F38A5.2
    Official Full Name
    TraB domain-containing protein
    Primary source
    WormBase:WBGene00018161
    Locus tag
    CELE_F38A5.2
    See related
    AllianceGenome:WB:WBGene00018161
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in nervous system and pharynx. Orthologous to human TRABD (TraB domain containing). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F38A5.2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (6582739..6585400, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Methyltransf_21 domain-containing protein;Secreted protein Neighboring gene Ufm1-specific protease Neighboring gene DnaJ homolog subfamily C member 2 Neighboring gene Galectin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Receptor L-domain domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    TraB domain-containing protein
    NP_501004.2
    • Confirmed by transcript evidence
    NP_501005.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      6582739..6585400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068603.7 → NP_501004.2  TraB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501004.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KZA2
      Conserved Domains (1) summary
      cl12050
      Location:156 → 438
      TraB; TraB family

    2. NM_068604.7 → NP_501005.2  TraB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501005.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Q55
      Conserved Domains (1) summary
      cl12050
      Location:154 → 436
      TraB; TraB family
    Nucleotide Protein
    Heading Accession and Version

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