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    clec-80 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565458, updated on 28-Oct-2024

    Summary

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    Official Symbol
    clec-80
    Official Full Name
    C-type lectin domain-containing protein
    Primary source
    WormBase:WBGene00043062
    Locus tag
    CELE_Y54G2A.39
    See related
    AllianceGenome:WB:WBGene00043062
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See clec-80 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    9
    Sequence:
    Chromosome: IV; NC_003282.8 (2823746..2828069)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene Ras-GAP domain-containing protein Neighboring gene Up-regulated in Daf-2 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    C-type lectin domain-containing protein
    NP_001023504.1
    • Confirmed by transcript evidence
    NP_001368082.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      2823746..2828069
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001028333.4 → NP_001023504.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001023504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q60F71
      Conserved Domains (1) summary
      smart00034
      Location:29 → 141
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    2. NM_001380111.2 → NP_001368082.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95XX5
      Conserved Domains (1) summary
      smart00034
      Location:29 → 146
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

    RNA

    1. NR_132458.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

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