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    C15h8orf58 similar to human chromosome 8 open reading frame 58 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361066, updated on 9-Dec-2024

    Summary

    Official Symbol
    C15h8orf58provided by RGD
    Official Full Name
    similar to human chromosome 8 open reading frame 58provided by RGD
    Primary source
    RGD:1308117
    See related
    EnsemblRapid:ENSRNOG00000008351 AllianceGenome:RGD:1308117
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308117
    Summary
    Orthologous to human C8orf58 (chromosome 8 open reading frame 58). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 50.1), Lung (RPKM 41.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See C15h8orf58 in Genome Data Viewer
    Location:
    15p11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (51638336..51645141, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (45228615..45235274, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (51834703..51841412, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 3 Neighboring gene cell cycle and apoptosis regulator 2 Neighboring gene PDZ and LIM domain 2 Neighboring gene uncharacterized LOC134482142 Neighboring gene sorbin and SH3 domain containing 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C8orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134571.4NP_001128043.2  uncharacterized protein C8orf58 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      A6HTJ0
      Conserved Domains (1) summary
      pfam15552
      Location:78364
      DUF4657; Domain of unknown function (DUF4657)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      51638336..51645141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274432.1XP_063130502.1  uncharacterized protein C8orf58 homolog isoform X2

      Related
      ENSRNOP00000011277.8, ENSRNOT00000011277.9
    2. XM_006252278.5XP_006252340.1  uncharacterized protein C8orf58 homolog isoform X3

      UniProtKB/TrEMBL
      A6HTJ0, D4A3I2
      Conserved Domains (1) summary
      pfam15552
      Location:78365
      DUF4657; Domain of unknown function (DUF4657)
    3. XM_063274431.1XP_063130501.1  uncharacterized protein C8orf58 homolog isoform X1