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    sephs1.L selenophosphate synthetase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379650, updated on 4-Jan-2025

    Summary

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    Official Symbol
    sephs1.L
    Official Full Name
    selenophosphate synthetase 1 L homeolog
    Primary source
    Xenbase:XB-GENE-986445
    Locus tag
    XELAEV_18017824mg
    See related
    EnsemblRapid:ENSXLAG00005035678 AllianceGenome:Xenbase:XB-GENE-986445
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    sephs1
    Summary
    Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be located in nuclear membrane and plasma membrane. Is expressed in respiratory system. Orthologous to human SEPHS1 (selenophosphate synthetase 1). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See sephs1.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (87680352..87705196)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (72343669..72369119)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A L homeolog Neighboring gene uncharacterized LOC108711218 Neighboring gene BEN domain containing 7 L homeolog Neighboring gene phytanoyl-CoA 2-hydroxylase L homeolog Neighboring gene upper zone of growth plate and cartilage matrix associated L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC68922

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables selenide, water dikinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    selenide, water dikinase 1
    Names
    selenium donor protein 1
    selenophosphate synthase 1
    NP_001079959.1
    XP_018106163.1
    XP_018106164.1
    XP_018106165.1
    XP_041440869.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086490.1 → NP_001079959.1  selenide, water dikinase 1

      See identical proteins and their annotated locations for NP_001079959.1

      Status: PROVISIONAL

      Source sequence(s)
      BC057731
      UniProtKB/Swiss-Prot
      Q6PF47
      UniProtKB/TrEMBL
      A0A1L8GZG9, A0A974HTC7
      Related
      ENSXLAP00005106707.1, ENSXLAT00005108818.1
      Conserved Domains (1) summary
      TIGR00476
      Location:19 → 333
      selD; selenium donor protein

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      87680352..87705196
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018250674.2 → XP_018106163.1  selenide, water dikinase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6PF47
      UniProtKB/TrEMBL
      A0A1L8GZG9, A0A974HTC7
      Conserved Domains (1) summary
      TIGR00476
      Location:19 → 333
      selD; selenium donor protein

    2. XM_018250676.2 → XP_018106165.1  selenide, water dikinase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6PF47
      UniProtKB/TrEMBL
      A0A1L8GZG9, A0A974HTC7
      Conserved Domains (1) summary
      TIGR00476
      Location:19 → 333
      selD; selenium donor protein

    3. XM_018250675.2 → XP_018106164.1  selenide, water dikinase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6PF47
      UniProtKB/TrEMBL
      A0A1L8GZG9, A0A974HTC7
      Conserved Domains (1) summary
      TIGR00476
      Location:19 → 333
      selD; selenium donor protein

    4. XM_041584935.1 → XP_041440869.1  selenide, water dikinase 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6PF47
      UniProtKB/TrEMBL
      A0A1L8GZG9, A0A974HTC7
      Conserved Domains (1) summary
      TIGR00476
      Location:19 → 333
      selD; selenium donor protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PF47.1 GenPept UniProtKB/Swiss-Prot:Q6PF47

    Gene LinkOut

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