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    Atxn7l3b ataxin 7-like 3B [ Mus musculus (house mouse) ]

    Gene ID: 382423, updated on 9-Dec-2024

    Summary

    Official Symbol
    Atxn7l3bprovided by MGI
    Official Full Name
    ataxin 7-like 3Bprovided by MGI
    Primary source
    MGI:MGI:1914971
    See related
    Ensembl:ENSMUSG00000074748 AllianceGenome:MGI:1914971
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4921506J03Rik; 6230409E21Rik
    Summary
    Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm. Is expressed in central nervous system; embryo; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human ATXN7L3B (ataxin 7 like 3B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See Atxn7l3b in Genome Data Viewer
    Location:
    10 D2; 10 60.92 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (112761333..112764931, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (112925428..112929026, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700010J16 gene Neighboring gene STARR-positive B cell enhancer ABC_E10644 Neighboring gene STARR-seq mESC enhancer starr_27908 Neighboring gene STARR-seq mESC enhancer starr_27909 Neighboring gene predicted gene 3942 Neighboring gene STARR-seq mESC enhancer starr_27910 Neighboring gene predicted gene, 22507 Neighboring gene STARR-seq mESC enhancer starr_27911 Neighboring gene STARR-seq mESC enhancer starr_27912 Neighboring gene STARR-seq mESC enhancer starr_27913 Neighboring gene STARR-seq mESC enhancer starr_27914 Neighboring gene predicted gene, 40765

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    ataxin-7-like protein 3B
    Names
    putative ataxin-7-like protein 3-like protein
    putative ataxin-7-like protein 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033474.2NP_001028646.2  ataxin-7-like protein 3B

      See identical proteins and their annotated locations for NP_001028646.2

      Status: VALIDATED

      Source sequence(s)
      AI662093, AK003616, BC058561, BY101566, W48093
      Consensus CDS
      CCDS36060.1
      UniProtKB/Swiss-Prot
      Q3UD01
      Related
      ENSMUSP00000096882.3, ENSMUST00000099276.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      112761333..112764931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)