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    MKRN4P makorin ring finger protein 4, pseudogene [ Gallus gallus (chicken) ]

    Gene ID: 395500, updated on 3-Dec-2024

    Summary

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    Symbol
    MKRN4Pprovided by CGNC
    Full Name
    makorin ring finger protein 4, pseudogeneprovided by CGNC
    Primary source
    CGNC:49350
    See related
    Ensembl:ENSGALG00010013348
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    MKRN1
    Orthologs
    human mouse all
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    Genomic context

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    See MKRN4P in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (56822897..56847021, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (57123748..57147900, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 7A Neighboring gene solute carrier family 37 member 3 Neighboring gene RAB19, member RAS oncogene family Neighboring gene pseudouridine-5'-phosphate glycosidase-like Neighboring gene uncharacterized LOC121106531

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ancient source of a distinct gene family encoding proteins featuring RING and C(3)H zinc-finger motifs with abundant expression in developing brain and nervous system. Gray TA, et al. Genomics, 2000 May 15. PMID 10843807
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase makorin-1
    Names
    makorin 1
    makorin ring finger protein 1
    NP_990073.2
    XP_015139918.2
    XP_046759984.1
    XP_046762572.1
    XP_046762574.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204742.3 → NP_990073.2  E3 ubiquitin-protein ligase makorin-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A8V0YLY7, Q9PTI4
      Related
      ENSGALP00010018927.1, ENSGALT00010032137.1
      Conserved Domains (3) summary
      smart00356
      Location:48 → 74
      ZnF_C3H1; zinc finger
      PHA03096
      Location:211 → 360
      PHA03096; p28-like protein; Provisional
      cd16730
      Location:268 → 328
      RING-HC_MKRN1_3; RING finger, HC subclass, found in makorin-1 (MKRN1), makorin-3 (MKRN3), and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      56822897..56847021 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284432.4 → XP_015139918.2  E3 ubiquitin-protein ligase makorin-1 isoform X1

      UniProtKB/TrEMBL
      Q9PTI4
      Conserved Domains (3) summary
      smart00356
      Location:48 → 74
      ZnF_C3H1; zinc finger
      PHA03096
      Location:211 → 360
      PHA03096; p28-like protein; Provisional
      cd16730
      Location:268 → 328
      RING-HC_MKRN1_3; RING finger, HC subclass, found in makorin-1 (MKRN1), makorin-3 (MKRN3), and similar proteins

    2. XM_046904028.1 → XP_046759984.1  E3 ubiquitin-protein ligase makorin-1 isoform X2

      UniProtKB/TrEMBL
      Q9PTI4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      57123748..57147900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046906616.1 → XP_046762572.1  E3 ubiquitin-protein ligase makorin-1 isoform X1

      UniProtKB/TrEMBL
      Q9PTI4

    2. XM_046906618.1 → XP_046762574.1  E3 ubiquitin-protein ligase makorin-1 isoform X2

      UniProtKB/TrEMBL
      Q9PTI4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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