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    THSD4 thrombospondin type 1 domain containing 4 [ Gallus gallus (chicken) ]

    Gene ID: 415395, updated on 3-Dec-2024

    Summary

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    Symbol
    THSD4provided by CGNC
    Full Name
    thrombospondin type 1 domain containing 4provided by CGNC
    Primary source
    CGNC:2998
    See related
    Ensembl:ENSGALG00010022759
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See THSD4 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (6337064..6611802)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (6216712..6486357)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene M-phase phosphoprotein 10 Neighboring gene leucine rich repeat containing 49 Neighboring gene La ribonucleoprotein 6, translational regulator Neighboring gene myosin IE Neighboring gene cholinergic receptor nicotinic alpha 7 subunit Neighboring gene family with sequence similarity 81 member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thrombospondin type-1 domain-containing protein 4
    Names
    thrombospondin, type I, domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6337064..6611802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046899269.1 → XP_046755225.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6

    2. XM_025154005.3 → XP_025009773.2  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6
      Related
      ENSGALP00010033491.1, ENSGALT00010055328.1
      Conserved Domains (2) summary
      smart00209
      Location:922 → 975
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:431 → 547
      ADAM_spacer1; ADAM-TS Spacer 1

    3. XM_025154006.3 → XP_025009774.2  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6
      Related
      ENSGALP00010033493.1, ENSGALT00010055330.1
      Conserved Domains (2) summary
      smart00209
      Location:922 → 975
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:431 → 547
      ADAM_spacer1; ADAM-TS Spacer 1

    4. XM_015278912.4 → XP_015134398.2  thrombospondin type-1 domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZPT3
      Related
      ENSGALP00010033486.1, ENSGALT00010055321.1
      Conserved Domains (2) summary
      smart00209
      Location:548 → 596
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:52 → 168
      ADAM_spacer1; ADAM-TS Spacer 1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6216712..6486357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925228.1 → XP_046781184.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6

    2. XM_040680665.2 → XP_040536599.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6
      Conserved Domains (2) summary
      smart00209
      Location:922 → 975
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:431 → 547
      ADAM_spacer1; ADAM-TS Spacer 1

    3. XM_040680666.2 → XP_040536600.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6
      Conserved Domains (2) summary
      smart00209
      Location:922 → 975
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:431 → 547
      ADAM_spacer1; ADAM-TS Spacer 1

    4. XM_040680667.2 → XP_040536601.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZRN1, A0A8V0ZRN6
      Conserved Domains (2) summary
      smart00209
      Location:922 → 975
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:431 → 547
      ADAM_spacer1; ADAM-TS Spacer 1

    5. XM_040680668.2 → XP_040536602.1  thrombospondin type-1 domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZPT3
      Conserved Domains (2) summary
      smart00209
      Location:548 → 596
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:52 → 168
      ADAM_spacer1; ADAM-TS Spacer 1
    Nucleotide Protein Strain
    Heading Accession and Version

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