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    ATP6V0D1 ATPase H+ transporting V0 subunit d1 [ Gallus gallus (chicken) ]

    Gene ID: 415674, updated on 3-Dec-2024

    Summary

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    Symbol
    ATP6V0D1provided by CGNC
    Full Name
    ATPase H+ transporting V0 subunit d1provided by CGNC
    Primary source
    CGNC:1599
    See related
    Ensembl:ENSGALG00010021637
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ATP6V0D1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (1393678..1418436, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (1565972..1590731, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A5 Neighboring gene formin homology 2 domain containing 1 Neighboring gene hydroxysteroid 11-beta dehydrogenase 2 Neighboring gene uncharacterized LOC121106580 Neighboring gene SNF-related serine/threonine-protein kinase-like Neighboring gene agouti related neuropeptide Neighboring gene microRNA mir-12219 Neighboring gene transfer RNA lysine (anticodon UUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of plasma membrane proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of vacuolar proton-transporting V-type ATPase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V-type proton ATPase subunit d 1
    Names
    ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1
    NP_001280240.1
    XP_015134621.1
    XP_046781389.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001293311.3 → NP_001280240.1  V-type proton ATPase subunit d 1

      See identical proteins and their annotated locations for NP_001280240.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000247
      UniProtKB/TrEMBL
      A0A8V0ZJC4
      Related
      ENSGALP00010031461.1, ENSGALT00010052555.1
      Conserved Domains (1) summary
      pfam01992
      Location:16 → 339
      vATP-synt_AC39; ATP synthase (C/AC39) subunit

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1393678..1418436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015279135.4 → XP_015134621.1  V-type proton ATPase subunit d 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZJC4
      Conserved Domains (2) summary
      COG1527
      Location:14 → 372
      NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
      pfam01992
      Location:16 → 361
      vATP-synt_AC39; ATP synthase (C/AC39) subunit

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1565972..1590731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925433.1 → XP_046781389.1  V-type proton ATPase subunit d 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZJC4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials