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    RBM6 RNA binding motif protein 6 [ Gallus gallus (chicken) ]

    Gene ID: 415931, updated on 17-Aug-2024

    Summary

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    Symbol
    RBM6provided by CGNC
    Full Name
    RNA binding motif protein 6provided by CGNC
    Primary source
    CGNC:2124
    See related
    Ensembl:ENSGALG00010027327
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RBM6 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (2759412..2813704)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (2776764..2831063)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12220 Neighboring gene macrophage stimulating 1 receptor Neighboring gene MON1 homolog A, secretory trafficking associated Neighboring gene semaphorin 3D Neighboring gene RAD54-like 2 (S. cerevisiae)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030588.3 → NP_001025759.3  RNA-binding protein 6

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000251
      UniProtKB/TrEMBL
      A0A8V1A3R0
      Related
      ENSGALP00010040520.1, ENSGALT00010066254.1
      Conserved Domains (3) summary
      smart00443
      Location:1107 → 1150
      G_patch; glycine rich nucleic binding domain
      smart00360
      Location:479 → 552
      RRM; RNA recognition motif
      cd16163
      Location:805 → 853
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2759412..2813704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040646187.2 → XP_040502121.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    2. XM_040646183.2 → XP_040502117.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    3. XM_015292822.4 → XP_015148308.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    4. XM_040646184.2 → XP_040502118.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Related
      ENSGALP00010040518.1, ENSGALT00010066252.1
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    5. XM_040646185.2 → XP_040502119.1  RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A3R0
      Conserved Domains (3) summary
      smart00443
      Location:1107 → 1150
      G_patch; glycine rich nucleic binding domain
      smart00360
      Location:479 → 552
      RRM; RNA recognition motif
      cd16163
      Location:805 → 853
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

    6. XM_015292823.4 → XP_015148309.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    7. XM_040646188.2 → XP_040502122.1  RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A3R0
      Conserved Domains (3) summary
      smart00443
      Location:1107 → 1150
      G_patch; glycine rich nucleic binding domain
      smart00360
      Location:479 → 552
      RRM; RNA recognition motif
      cd16163
      Location:805 → 853
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins

    8. XM_040646182.2 → XP_040502116.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    9. XM_015292824.4 → XP_015148310.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
      Conserved Domains (4) summary
      smart00443
      Location:1108 → 1151
      G_patch; glycine rich nucleic binding domain
      cd16163
      Location:806 → 854
      OCRE_RBM6; OCRE domain found in RNA-binding protein 6 (RBM6) and similar proteins
      cd12314
      Location:477 → 554
      RRM1_RBM6; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 6 (RBM6)
      cd12563
      Location:691 → 777
      RRM2_RBM6; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 6 (RBM6)

    10. XM_046899873.1 → XP_046755829.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2776764..2831063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926218.1 → XP_046782174.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    2. XM_046926213.1 → XP_046782169.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    3. XM_046926211.1 → XP_046782167.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    4. XM_046926214.1 → XP_046782170.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    5. XM_046926215.1 → XP_046782171.1  RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A3R0

    6. XM_046926216.1 → XP_046782172.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    7. XM_046926220.1 → XP_046782176.1  RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A3R0

    8. XM_046926212.1 → XP_046782168.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    9. XM_046926217.1 → XP_046782173.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2

    10. XM_046926219.1 → XP_046782175.1  RNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A1D5PAD2
    Nucleotide Protein Strain
    Heading Accession and Version

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