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    PHF2 PHD finger protein 2 [ Gallus gallus (chicken) ]

    Gene ID: 415981, updated on 3-Dec-2024

    Summary

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    Symbol
    PHF2provided by CGNC
    Full Name
    PHD finger protein 2provided by CGNC
    Primary source
    CGNC:3843
    See related
    Ensembl:ENSGALG00010027692
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PHF2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (6479323..6561226, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (6505871..6587920, complement)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417165 Neighboring gene BARX homeobox 1 Neighboring gene uncharacterized LOC107054447 Neighboring gene uncharacterized LOC121106656 Neighboring gene family with sequence similarity 120C Neighboring gene uncharacterized LOC121106657

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 2; lysine-specific demethylase PHF2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6479323..6561226 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293436.4 → XP_015148922.2  lysine-specific demethylase PHF2 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AFD0
      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    2. XM_414324.8 → XP_414324.3  lysine-specific demethylase PHF2 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AFD0
      Related
      ENSGALP00010041027.1, ENSGALT00010067123.1
      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    3. XM_046900118.1 → XP_046756074.1  lysine-specific demethylase PHF2 isoform X2

      UniProtKB/TrEMBL
      A0A8V1ACQ9

    4. XM_040646699.2 → XP_040502633.1  lysine-specific demethylase PHF2 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACQ9
      Conserved Domains (2) summary
      smart00558
      Location:325 → 388
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl22851
      Location:158 → 180
      PHD_SF; PHD finger superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6505871..6587920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682165.2 → XP_040538099.1  lysine-specific demethylase PHF2 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AFD0
      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    2. XM_040682163.2 → XP_040538097.1  lysine-specific demethylase PHF2 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AFD0
      Conserved Domains (2) summary
      smart00558
      Location:201 → 264
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15554
      Location:7 → 53
      PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7

    3. XM_040682162.2 → XP_040538096.2  lysine-specific demethylase PHF2 isoform X6

    4. XM_040682161.2 → XP_040538095.2  lysine-specific demethylase PHF2 isoform X5

      UniProtKB/TrEMBL
      A0A8V1ACQ9
    Nucleotide Protein Strain
    Heading Accession and Version

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