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    JADE2 jade family PHD finger 2 [ Gallus gallus (chicken) ]

    Gene ID: 416315, updated on 3-Dec-2024

    Summary

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    Symbol
    JADE2provided by CGNC
    Full Name
    jade family PHD finger 2provided by CGNC
    Primary source
    CGNC:4840
    See related
    Ensembl:ENSGALG00010013261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PHF15
    Orthologs
    human mouse all
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    Genomic context

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    See JADE2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (15364274..15421541, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (15376051..15433347, complement)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106746 Neighboring gene calcium modulating ligand Neighboring gene SEC24 homolog A, COPII coat complex component Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene secretion associated Ras related GTPase 1B Neighboring gene uncharacterized LOC121106747 Neighboring gene uncharacterized LOC121106748

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-2; E3 ubiquitin-protein ligase Jade-2
    Names
    PHD finger protein 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15364274..15421541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046900485.1 → XP_046756441.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0

    2. XM_015294092.4 → XP_015149578.2  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:137 → 505
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:674 → 835
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:254 → 364
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    3. XM_025155032.3 → XP_025010800.2  E3 ubiquitin-protein ligase Jade-2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Related
      ENSGALP00010018681.1, ENSGALT00010031878.1
      Conserved Domains (3) summary
      COG5141
      Location:161 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:655 → 816
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:278 → 388
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    4. XM_015294091.4 → XP_015149577.2  E3 ubiquitin-protein ligase Jade-2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YIN0, A0A8V0YJE4
      Related
      ENSGALP00010018684.1, ENSGALT00010031881.1
      Conserved Domains (3) summary
      COG5141
      Location:161 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:698 → 859
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:278 → 388
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    5. XM_414632.7 → XP_414632.4  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:137 → 505
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:674 → 835
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:254 → 364
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      15376051..15433347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927209.1 → XP_046783165.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0

    2. XM_040682985.2 → XP_040538919.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:137 → 505
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:674 → 835
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:254 → 364
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    3. XM_040682984.2 → XP_040538918.1  E3 ubiquitin-protein ligase Jade-2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:161 → 529
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:698 → 859
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:278 → 388
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    4. XM_040682983.2 → XP_040538917.1  E3 ubiquitin-protein ligase Jade-2 isoform X5

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:235 → 603
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:729 → 890
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:352 → 462
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    5. XM_040682982.2 → XP_040538916.1  E3 ubiquitin-protein ligase Jade-2 isoform X4

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:235 → 603
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:772 → 933
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:352 → 462
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    6. XM_040682986.1 → XP_040538920.1  E3 ubiquitin-protein ligase Jade-2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YIN0
      Conserved Domains (3) summary
      COG5141
      Location:137 → 505
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      PRK07764
      Location:674 → 835
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd15705
      Location:254 → 364
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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