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    NUP188 nucleoporin 188 [ Gallus gallus (chicken) ]

    Gene ID: 417198, updated on 3-Dec-2024

    Summary

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    Official Symbol
    NUP188provided by CGNC
    Official Full Name
    nucleoporin 188provided by CGNC
    Primary source
    CGNC:3361
    See related
    Ensembl:ENSGALG00010028597
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See NUP188 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    46
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (6005610..6032259)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (5419740..5446391)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene phytanoyl-CoA dioxygenase domain containing 1 Neighboring gene dolichol kinase Neighboring gene uncharacterized LOC124417281 Neighboring gene SH3 domain containing GRB2 like, endophilin B2 Neighboring gene mitoguardin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore inner ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin NUP188
    Names
    nucleoporin 188kDa
    nucleoporin NUP188 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030690.2 → NP_001025861.2  nucleoporin NUP188

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      Q5F3Q0
      Related
      ENSGALP00010042699.1, ENSGALT00010069257.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6005610..6032259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046901783.1 → XP_046757739.1  nucleoporin NUP188 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AEZ9

    2. XM_015279483.4 → XP_015134969.2  nucleoporin NUP188 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A9R3, Q5F3Q0
      Related
      ENSGALP00010042702.1, ENSGALT00010069260.1

    3. XM_015279484.4 → XP_015134970.2  nucleoporin NUP188 isoform X3

      UniProtKB/TrEMBL
      Q5F3Q0

    4. XM_046901784.1 → XP_046757740.1  nucleoporin NUP188 isoform X4

      UniProtKB/TrEMBL
      Q5F3Q0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5419740..5446391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928976.1 → XP_046784932.1  nucleoporin NUP188 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AEZ9

    2. XM_046928975.1 → XP_046784931.1  nucleoporin NUP188 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A9R3, Q5F3Q0

    3. XM_046928977.1 → XP_046784933.1  nucleoporin NUP188 isoform X3

      UniProtKB/TrEMBL
      Q5F3Q0

    4. XM_046928978.1 → XP_046784934.1  nucleoporin NUP188 isoform X4

      UniProtKB/TrEMBL
      Q5F3Q0
    Nucleotide Protein Strain
    Heading Accession and Version

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