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    HNRNPM heterogeneous nuclear ribonucleoprotein M [ Gallus gallus (chicken) ]

    Gene ID: 420054, updated on 10-Oct-2024

    Summary

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    Official Symbol
    HNRNPMprovided by CGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Mprovided by CGNC
    Primary source
    CGNC:51167
    See related
    Ensembl:ENSGALG00010028328
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    HNRPM
    Orthologs
    human mouse all
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    Genomic context

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    See HNRNPM in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (922632..947994, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (495275..520632, complement)

    Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121107727 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene ceramide synthase 4-like Neighboring gene kelch-like protein 23-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability involved in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein M

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030932.2 → NP_001026103.1  heterogeneous nuclear ribonucleoprotein M

      See identical proteins and their annotated locations for NP_001026103.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000374
      UniProtKB/TrEMBL
      A0A8V1AFZ6, F7B5K7, Q5ZL80
      Related
      ENSGALP00010042187.1, ENSGALT00010068602.1
      Conserved Domains (5) summary
      COG0724
      Location:634 → 709
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12386
      Location:212 → 285
      RRM2_hnRNPM_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein M (hnRNP M) and similar proteins
      cd12657
      Location:77 → 152
      RRM1_hnRNPM; RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
      cd12661
      Location:633 → 709
      RRM3_hnRNPM; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
      pfam11532
      Location:46 → 75
      HnRNP_M; Heterogeneous nuclear ribonucleoprotein M

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      922632..947994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046904570.1 → XP_046760526.1  heterogeneous nuclear ribonucleoprotein M isoform X7

    2. XM_046904569.1 → XP_046760525.1  heterogeneous nuclear ribonucleoprotein M isoform X6

    3. XM_046904568.1 → XP_046760524.1  heterogeneous nuclear ribonucleoprotein M isoform X5

    4. XM_040653516.2 → XP_040509450.1  heterogeneous nuclear ribonucleoprotein M isoform X3

      UniProtKB/TrEMBL
      A0A8V1AFZ6
      Conserved Domains (2) summary
      TIGR01628
      Location:55 → 287
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:668 → 737
      RRM; RNA recognition motif

    5. XM_040653515.2 → XP_040509449.1  heterogeneous nuclear ribonucleoprotein M isoform X2

      UniProtKB/TrEMBL
      A0A8V1AG01, A0A8V1AIA0
      Related
      ENSGALP00010042185.1, ENSGALT00010068600.1
      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 316
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:697 → 766
      RRM; RNA recognition motif

    6. XM_040653524.2 → XP_040509458.1  heterogeneous nuclear ribonucleoprotein M isoform X10

      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 381
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:449 → 518
      RRM; RNA recognition motif

    7. XM_040653517.2 → XP_040509451.1  heterogeneous nuclear ribonucleoprotein M isoform X4

      UniProtKB/TrEMBL
      A0A8V1AG01
      Related
      ENSGALP00010042186.1, ENSGALT00010068601.1
      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 381
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:664 → 733
      RRM; RNA recognition motif

    8. XM_040653523.2 → XP_040509457.1  heterogeneous nuclear ribonucleoprotein M isoform X9

      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 317
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:479 → 548
      RRM; RNA recognition motif

    9. XM_040653522.2 → XP_040509456.1  heterogeneous nuclear ribonucleoprotein M isoform X8

      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 317
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:483 → 552
      RRM; RNA recognition motif

    10. XM_040653514.2 → XP_040509448.1  heterogeneous nuclear ribonucleoprotein M isoform X1

      UniProtKB/TrEMBL
      A0A8V1AG01
      Conserved Domains (2) summary
      TIGR01628
      Location:72 → 317
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      smart00360
      Location:698 → 767
      RRM; RNA recognition motif

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      495275..520632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046933744.1 → XP_046789700.1  heterogeneous nuclear ribonucleoprotein M isoform X7

    2. XM_046933743.1 → XP_046789699.1  heterogeneous nuclear ribonucleoprotein M isoform X6

    3. XM_046933742.1 → XP_046789698.1  heterogeneous nuclear ribonucleoprotein M isoform X5

    4. XM_046933740.1 → XP_046789696.1  heterogeneous nuclear ribonucleoprotein M isoform X3

    5. XM_046933739.1 → XP_046789695.1  heterogeneous nuclear ribonucleoprotein M isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIA0

    6. XM_046933747.1 → XP_046789703.1  heterogeneous nuclear ribonucleoprotein M isoform X10

    7. XM_046933741.1 → XP_046789697.1  heterogeneous nuclear ribonucleoprotein M isoform X4

    8. XM_046933746.1 → XP_046789702.1  heterogeneous nuclear ribonucleoprotein M isoform X9

    9. XM_046933745.1 → XP_046789701.1  heterogeneous nuclear ribonucleoprotein M isoform X8

    10. XM_046933738.1 → XP_046789694.1  heterogeneous nuclear ribonucleoprotein M isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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