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    SEMA5A semaphorin 5A [ Gallus gallus (chicken) ]

    Gene ID: 420931, updated on 10-Oct-2024

    Summary

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    Symbol
    SEMA5Aprovided by CGNC
    Full Name
    semaphorin 5Aprovided by CGNC
    Primary source
    CGNC:9869
    See related
    Ensembl:ENSGALG00010000802
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA5A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (78248305..78580376)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (78245592..78571809)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101747535 Neighboring gene uncharacterized LOC121109593 Neighboring gene uncharacterized LOC107052642 Neighboring gene small nucleolar RNA SNORD123 Neighboring gene uncharacterized LOC112531792 Neighboring gene uncharacterized LOC121109637 Neighboring gene uncharacterized LOC112531793

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon extension IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-5A
    Names
    sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      78248305..78580376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040695738.2 → XP_040551672.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    2. XM_046926696.1 → XP_046782652.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    3. XM_046926710.1 → XP_046782666.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    4. XM_046926701.1 → XP_046782657.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    5. XM_046926754.1 → XP_046782710.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    6. XM_040695733.2 → XP_040551667.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    7. XM_040695737.2 → XP_040551671.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    8. XM_015282264.4 → XP_015137750.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    9. XM_015282268.4 → XP_015137754.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Related
      ENSGALP00010000957.1, ENSGALT00010001756.1
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    10. XM_015282269.4 → XP_015137755.1  semaphorin-5A isoform X2

      UniProtKB/TrEMBL
      A0A1D5PFR3, A0A8V0X0Z9
      Related
      ENSGALP00010000960.1, ENSGALT00010001759.1
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    11. XM_419016.8 → XP_419016.4  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    12. XM_040695736.2 → XP_040551670.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    13. XM_046926746.1 → XP_046782702.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    14. XM_040695732.2 → XP_040551666.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Related
      ENSGALP00010000962.1, ENSGALT00010001761.1
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    15. XM_040695735.2 → XP_040551669.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    16. XM_046926765.1 → XP_046782721.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    17. XM_046926758.1 → XP_046782714.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    18. XM_040695734.2 → XP_040551668.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      78245592..78571809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040662978.2 → XP_040518912.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    2. XM_046911810.1 → XP_046767766.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    3. XM_046911812.1 → XP_046767768.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    4. XM_046911811.1 → XP_046767767.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    5. XM_046911814.1 → XP_046767770.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    6. XM_040662972.2 → XP_040518906.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    7. XM_040662977.2 → XP_040518911.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    8. XM_040662969.2 → XP_040518903.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    9. XM_040662971.2 → XP_040518905.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    10. XM_040662979.2 → XP_040518913.1  semaphorin-5A isoform X2

      UniProtKB/TrEMBL
      A0A1D5PFR3, A0A8V0X0Z9
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    11. XM_046911813.1 → XP_046767769.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    12. XM_040662973.2 → XP_040518907.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    13. XM_040662970.2 → XP_040518904.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    14. XM_040662976.2 → XP_040518910.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    15. XM_040662975.2 → XP_040518909.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat

    16. XM_046911816.1 → XP_046767772.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    17. XM_046911815.1 → XP_046767771.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      R4GFU3

    18. XM_040662974.2 → XP_040518908.1  semaphorin-5A isoform X1

      UniProtKB/TrEMBL
      A0A8V0X0Z9, R4GFU3
      Conserved Domains (3) summary
      cd11263
      Location:52 → 487
      Sema_5A; The Sema domain, a protein interacting module, of semaphorin 5A (Sema5A)
      smart00209
      Location:600 → 653
      TSP1; Thrombospondin type 1 repeats
      pfam01437
      Location:488 → 535
      PSI; Plexin repeat
    Nucleotide Protein
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