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    NRDE2 NRDE-2, necessary for RNA interference, domain containing [ Gallus gallus (chicken) ]

    Gene ID: 423404, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NRDE2provided by CGNC
    Official Full Name
    NRDE-2, necessary for RNA interference, domain containingprovided by CGNC
    Primary source
    CGNC:8113
    See related
    Ensembl:ENSGALG00010017628
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C14orf102; C5H14ORF102
    Orthologs
    human mouse all
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    Genomic context

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    See NRDE2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (43332279..43357124, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (43296078..43320895, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene uncharacterized LOC112532490 Neighboring gene proteasome 26S subunit, ATPase 1 Neighboring gene uncharacterized LOC121110928 Neighboring gene calmodulin 1 (phosphorylase kinase, delta)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear exosome regulator NRDE2
    Names
    UPF0614 protein C14orf102
    protein NRDE2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      43332279..43357124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421314.8 → XP_421314.4  nuclear exosome regulator NRDE2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z2F0
      Related
      ENSGALP00010025088.1, ENSGALT00010042598.1

    2. XM_015287744.4 → XP_015143230.2  nuclear exosome regulator NRDE2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z2F0
      Related
      ENSGALP00010025096.1, ENSGALT00010042606.1

    RNA

    1. XR_003075334.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      43296078..43320895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672987.2 → XP_040528921.1  nuclear exosome regulator NRDE2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z2F0
      Conserved Domains (2) summary
      pfam08424
      Location:308 → 640
      NRDE-2; necessary for RNA interference
      cd22200
      Location:152 → 244
      NRDE2_MID; MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins

    2. XM_040672986.2 → XP_040528920.1  nuclear exosome regulator NRDE2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z2F0
      Conserved Domains (2) summary
      pfam08424
      Location:309 → 641
      NRDE-2; necessary for RNA interference
      cd22200
      Location:153 → 245
      NRDE2_MID; MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins

    RNA

    1. XR_005850607.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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