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    SLC6A9 solute carrier family 6 member 9 [ Gallus gallus (chicken) ]

    Gene ID: 424576, updated on 10-Oct-2024

    Summary

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    Symbol
    SLC6A9provided by CGNC
    Full Name
    solute carrier family 6 member 9provided by CGNC
    Primary source
    CGNC:52219
    See related
    Ensembl:ENSGALG00010023664
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SLC6A9 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (20069533..20085003, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (20076729..20092197, complement)

    Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene DPH2 homolog Neighboring gene ATPase H+ transporting V0 subunit b Neighboring gene beta-1,4-galactosyltransferase 2 Neighboring gene uncharacterized LOC107054060 Neighboring gene Kruppel-like factor 1 (erythroid)-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycine:sodium symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycine import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glycinergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium- and chloride-dependent glycine transporter 1
    Names
    solute carrier family 6 (neurotransmitter transporter, glycine), member 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031279.2 → NP_001026450.2  sodium- and chloride-dependent glycine transporter 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000239
      UniProtKB/TrEMBL
      F1P300, Q5ZL10
      Related
      ENSGALP00010035020.1, ENSGALT00010057675.1
      Conserved Domains (1) summary
      cd11498
      Location:11 → 588
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      20069533..20085003 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040704657.2 → XP_040560591.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

      UniProtKB/TrEMBL
      F1P300, Q5ZL10
      Conserved Domains (1) summary
      cd11498
      Location:11 → 588
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    2. XM_046944486.1 → XP_046800442.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

    3. XM_015290994.4 → XP_015146480.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZTV1
      Conserved Domains (1) summary
      cl00456
      Location:68 → 552
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_046944484.1 → XP_046800440.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

      UniProtKB/TrEMBL
      F1P300
      Related
      ENSGALP00010035005.1, ENSGALT00010057651.1

    5. XM_046944485.1 → XP_046800441.1  sodium- and chloride-dependent glycine transporter 1 isoform X4

    6. XM_015290997.4 → XP_015146483.3  sodium- and chloride-dependent glycine transporter 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZTV1
      Conserved Domains (1) summary
      cd11498
      Location:30 → 607
      SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

    7. XM_046944487.1 → XP_046800443.1  sodium- and chloride-dependent glycine transporter 1 isoform X6

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      20076729..20092197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046922779.1 → XP_046778735.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

      UniProtKB/TrEMBL
      F1P300

    2. XM_046922783.1 → XP_046778739.1  sodium- and chloride-dependent glycine transporter 1 isoform X5

    3. XM_046922781.1 → XP_046778737.1  sodium- and chloride-dependent glycine transporter 1 isoform X3

    4. XM_046922782.1 → XP_046778738.1  sodium- and chloride-dependent glycine transporter 1 isoform X4

    5. XM_046922780.1 → XP_046778736.1  sodium- and chloride-dependent glycine transporter 1 isoform X2

      UniProtKB/TrEMBL
      F1P300

    6. XM_046922778.1 → XP_046778734.1  sodium- and chloride-dependent glycine transporter 1 isoform X1

    7. XM_046922784.1 → XP_046778740.1  sodium- and chloride-dependent glycine transporter 1 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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