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    CG7907 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42539, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG7907provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038887
    Locus tag
    Dmel_CG7907
    See related
    AllianceGenome:FB:FBgn0038887
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG7907
    Summary
    Predicted to enable RNA cap binding activity and mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be part of nuclear cap binding activity complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG7907 in Genome Data Viewer
    Location:
    93E1-93E1; 3-72 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (21403735..21406690)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (17229457..17232412)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase family 49 member B2 Neighboring gene long non-coding RNA:CR46046 Neighboring gene Chemosensory protein B 93a Neighboring gene Chemosensory protein B 93b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Affinity Density: a novel genomic approach to the identification of transcription factor regulatory targets. Hazelett DJ, et al. Bioinformatics, 2009 Jul 1. PMID 19401399, Free PMC Article
    2. Pre-messenger RNA processing factors in the Drosophila genome. Mount SM, et al. J Cell Biol, 2000 Jul 24. PMID 10908584, Free PMC Article
    3. spenito is required for sex determination in Drosophila melanogaster. Yan D, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324914, Free PMC Article
    4. A systems biology analysis of the Drosophila phagosome. Stuart LM, et al. Nature, 2007 Jan 4. PMID 17151602
    5. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA cap binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of nuclear cap binding complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of nuclear cap binding complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG7907-PB
    CG7907-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      21403735..21406690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001104390.2 → NP_001097860.1  uncharacterized protein Dmel_CG7907, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097860.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4V551
      Conserved Domains (3) summary
      smart00543
      Location:27 → 243
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam09088
      Location:310 → 484
      MIF4G_like; MIF4G like
      pfam09090
      Location:502 → 709
      MIF4G_like_2; MIF4G like

    2. NM_001104391.3 → NP_001097861.1  uncharacterized protein Dmel_CG7907, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097861.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4V551
      Conserved Domains (3) summary
      smart00543
      Location:27 → 243
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam09088
      Location:310 → 484
      MIF4G_like; MIF4G like
      pfam09090
      Location:502 → 709
      MIF4G_like_2; MIF4G like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V551 Q4V551

    Gene LinkOut

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