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    LOC4327511 pumilio homolog 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327511, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327511
    Gene description
    pumilio homolog 1
    Locus tag
    OSNPB_010844800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0446B05.8
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    Genomic context

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    See LOC4327511 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36904050..36911476)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36278943..36286383)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase PCS1 Neighboring gene uncharacterized LOC136353951 Neighboring gene transcription factor PCL1-like Neighboring gene protein PSK SIMULATOR 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 1
    Names
    Os01g0844800
    putative pumilio domain-containing protein PPD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      36904050..36911476
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755739.3 → XP_015611225.1  pumilio homolog 1

      UniProtKB/TrEMBL
      A0A0P0VA86, A2ZZI4, Q0JHT2, Q8S249
      Conserved Domains (2) summary
      cd07920
      Location:720 → 1041
      Pumilio; Pumilio-family RNA binding domain
      pfam07990
      Location:310 → 724
      NABP; Nucleic acid binding protein NABP
    Nucleotide Protein
    Heading Accession and Version

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