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    LOC4348591 2-hydroxy-palmitic acid dioxygenase MPO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348591, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348591
    Gene description
    2-hydroxy-palmitic acid dioxygenase MPO1
    Locus tag
    OSNPB_100407200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348591 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14598478..14599540, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13940036..13941282, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pectinesterase 31 Neighboring gene uncharacterized LOC4348590 Neighboring gene protein NEN1 Neighboring gene protein NEN1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sphingoid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-hydroxy-palmitic acid dioxygenase MPO1
    Names
    Os10g0407200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      14598478..14599540 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758814.3 → XP_015614300.1  2-hydroxy-palmitic acid dioxygenase MPO1

      UniProtKB/TrEMBL
      A0A5S6RCX4, B8BGS1, Q7XEU0, Q948H7
      Conserved Domains (1) summary
      cl01879
      Location:8 → 190
      DUF962; Protein of unknown function (DUF962)
    Nucleotide Protein
    Heading Accession and Version

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