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    GOLGA6L9 golgin A6 family like 9 [ Homo sapiens (human) ]

    Gene ID: 440295, updated on 10-Dec-2024

    Summary

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    Official Symbol
    GOLGA6L9provided by HGNC
    Official Full Name
    golgin A6 family like 9provided by HGNC
    Primary source
    HGNC:HGNC:37229
    See related
    Ensembl:ENSG00000197978 AllianceGenome:HGNC:37229
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GOLGA6L20
    Expression
    Broad expression in testis (RPKM 10.2), skin (RPKM 7.1) and 25 other tissues See more
    Orthologs
    all
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    Genomic context

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    See GOLGA6L9 in Genome Data Viewer
    Location:
    15q25.2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (82415923..82439153)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (80293944..80303281)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (82722021..82731353)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 10 Neighboring gene NANOG hESC enhancer GRCh37_chr15:82798244-82798745 Neighboring gene UBE2Q2 pseudogene 2 Neighboring gene ribosomal protein L9 pseudogene 8 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr15:83109001-83109502 and GRCh37_chr15:83006785-83007776 Neighboring gene uncharacterized LOC102724034 Neighboring gene dynamin 1 pseudogene 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. A proteome-scale map of the SARS-CoV-2-human contactome. Kim DK, et al. Nat Biotechnol, 2023 Jan. PMID 36217029, Free PMC Article
    2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    3. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • DKFZp686C168

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    golgin subfamily A member 6-like protein 9
    Names
    golgi autoantigen, golgin subfamily a, 6-like 9
    golgin A6 family-like 20
    putative golgin subfamily A member 6-like protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291420.2 → NP_001278349.1  golgin subfamily A member 6-like protein 9 isoform 2

      See identical proteins and their annotated locations for NP_001278349.1

      Status: VALIDATED

      Source sequence(s)
      AC243919
      UniProtKB/Swiss-Prot
      A6NEM1
      Conserved Domains (1) summary
      pfam15070
      Location:2 → 40
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    2. NM_198181.4 → NP_937824.3  golgin subfamily A member 6-like protein 9 isoform 1

      See identical proteins and their annotated locations for NP_937824.3

      Status: VALIDATED

      Source sequence(s)
      AC243919
      Consensus CDS
      CCDS45326.1
      UniProtKB/Swiss-Prot
      A0A087WXJ1, A6NEM1, A6NFL8, H0YK89, Q8IVV3
      UniProtKB/TrEMBL
      A0A087X1J3
      Related
      ENSP00000481078.1, ENST00000618348.2
      Conserved Domains (1) summary
      pfam15070
      Location:83 → 222
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      82415923..82439153
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047432539.1 → XP_047288495.1  golgin subfamily A member 6-like protein 9 isoform X2

    2. XM_017022226.2 → XP_016877715.1  golgin subfamily A member 6-like protein 9 isoform X3

      UniProtKB/TrEMBL
      H0YA86

    3. XM_011521601.3 → XP_011519903.1  golgin subfamily A member 6-like protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A087X1J3
      Conserved Domains (1) summary
      pfam15070
      Location:75 → 178
      GOLGA2L5; Putative golgin subfamily A member 2-like protein 5

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187606.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      218901..228233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      80293944..80303281
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6NEM1.4 GenPept UniProtKB/Swiss-Prot:A6NEM1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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