U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    KNL1 kinetochore scaffold 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 453338, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    KNL1provided by VGNC
    Official Full Name
    kinetochore scaffold 1provided by VGNC
    Primary source
    VGNC:VGNC:6447
    Locus tag
    CK820_G0033498
    See related
    Ensembl:ENSPTRG00000006925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    CASC5
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See KNL1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 16 NC_072414.2 (32563339..32633775)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 15 NC_072413.1 (32560189..32630620)

    Chromosome 16 - NC_072414.2Genomic Context describing neighboring genes Neighboring gene RNA pseudouridine synthase domain containing 2 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC134808442 Neighboring gene uncharacterized LOC107968600 Neighboring gene RAD51 recombinase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in attachment of spindle microtubules to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein CASC5; kinetochore scaffold 1
    Names
    cancer susceptibility candidate 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072414.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      32563339..32633775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016927946.4 → XP_016783435.1  kinetochore scaffold 1 isoform X1

      UniProtKB/TrEMBL
      A0A2J8QDK0, A0A2J8QDK8, A0A6D2WBA3, H2QZH8
      Related
      ENSPTRP00000039039.5
      Conserved Domains (2) summary
      pfam04111
      Location:2002 → 2095
      APG6; Autophagy protein Apg6
      cl25732
      Location:1915 → 2103
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_016927947.4 → XP_016783436.1  kinetochore scaffold 1 isoform X2

      UniProtKB/TrEMBL
      A0A2J8QDK0

    3. XM_063794750.1 → XP_063650820.1  kinetochore scaffold 1 isoform X3

      UniProtKB/TrEMBL
      A0A2J8QDK0

    4. XM_063794752.1 → XP_063650822.1  kinetochore scaffold 1 isoform X3

      UniProtKB/TrEMBL
      A0A2J8QDK0

    5. XM_063794751.1 → XP_063650821.1  kinetochore scaffold 1 isoform X3

      UniProtKB/TrEMBL
      A0A2J8QDK0

    6. XM_063794753.1 → XP_063650823.1  kinetochore scaffold 1 isoform X3

      UniProtKB/TrEMBL
      A0A2J8QDK0

    RNA

    1. XR_010151608.1 RNA Sequence

    2. XR_010151609.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.