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    PRG4 proteoglycan 4 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 457587, updated on 29-Mar-2024

    Summary

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    Gene symbol
    PRG4
    Gene description
    proteoglycan 4
    Locus tag
    CK820_G0013515
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See PRG4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (62783607..62800879, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (168548846..168566119)

    Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene phosducin Neighboring gene odr-4 GPCR localization factor homolog Neighboring gene U6 spliceosomal RNA Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene hemicentin 1 Neighboring gene uncharacterized LOC134807710

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables scavenger receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteoglycan 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      62783607..62800879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054656717.2 → XP_054512692.1  proteoglycan 4 isoform X5

    2. XM_054656711.2 → XP_054512686.1  proteoglycan 4 isoform X2

    3. XM_054656716.2 → XP_054512691.1  proteoglycan 4 isoform X4

    4. XM_054656715.2 → XP_054512690.1  proteoglycan 4 isoform X3

    5. XM_054656709.2 → XP_054512684.1  proteoglycan 4 isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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