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    fen flap endonuclease-1 [ Thermofilum pendens Hrk 5 ]

    Gene ID: 4602105, updated on 14-Apr-2023

    Summary

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    Gene symbol
    fen
    Gene description
    flap endonuclease-1
    Locus tag
    TPEN_RS02185
    Gene type
    protein coding
    Organism
    Thermofilum pendens Hrk 5 (strain: Hrk 5, type-material: type strain of Thermofilum pendens)
    Lineage
    Archaea; Thermoproteota; Thermoprotei; Thermofilales; Thermofilaceae; Thermofilum
    Old locus tag
    Tpen_0426
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    Genomic context

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    Sequence:
    NC_008698.1 (386639..387664)

    NC_008698.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor aIF-1A Neighboring gene thioredoxin family protein Neighboring gene ATP-dependent DNA ligase Neighboring gene MBL fold metallo-hydrolase Neighboring gene signal recognition particle-docking protein FtsY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_008698.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular structure and novel DNA binding sites located in loops of flap endonuclease-1 from Pyrococcus horikoshii. Matsui E, et al. J Biol Chem, 2002 Oct 4. PMID 12147694

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    flap endonuclease-1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008698.1 Reference assembly

      Range
      386639..387664
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_011752100.1 flap endonuclease-1 [Thermofilum pendens]

      See identical proteins and their annotated locations for WP_011752100.1

      UniProtKB/TrEMBL
      A1RXA5
      Conserved Domains (3) summary
      cd09903
      Location:226 → 289
      H3TH_FEN1-Arc; H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Archaeal homologs
      cd09867
      Location:3 → 339
      PIN_FEN1; PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs
      TIGR03674
      Location:1 → 340
      fen_arch; flap structure-specific endonuclease
    Nucleotide Protein
    Heading Accession and Version

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