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    PATR-DQB1 major histocompatibility complex, class II, DQ beta 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 462594, updated on 10-Oct-2024

    Summary

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    Gene symbol
    PATR-DQB1
    Gene description
    major histocompatibility complex, class II, DQ beta 1
    Locus tag
    CK820_G0006939
    See related
    Ensembl:ENSPTRG00000018001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    mhc-DRB; Patr-DRB1
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    Genomic context

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    See PATR-DQB1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (38476263..38532876, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (38476270..38487098, complement)

    Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 3 chain Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DQ alpha 1 Neighboring gene HLA class II histocompatibility antigen, DQ beta 1 chain Neighboring gene uncharacterized LOC107975113

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterisation of four non-human primate Mhc-DQB1 alleles. de Groot NG, et al. Tissue Antigens, 1998 Nov. PMID 9864042
    2. Mhc-DQB repertoire variation in hominoid and Old World primate species. Otting N, et al. J Immunol, 1992 Jul 15. PMID 1624794
    3. The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts. de Groot NG, et al. Mol Immunol, 2009 Dec. PMID 19800692, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in antigen processing and presentation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MHC class II protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    major histocompatibility complex, class II, DQ beta 1
    Names
    DRB1 transplantation antigen
    MHC class II DR-beta-1*0201
    MHC class II DR-beta-1*0202
    MHC class II DR-beta-1*0203
    MHC class II DR-beta-1*0204
    MHC class II DRB antigen
    MHC class II antigen
    MHC class II protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271071.3 → NP_001258000.3  major histocompatibility complex, class II, DQ beta 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAQQLN020000005
      UniProtKB/TrEMBL
      H2RAS7
      Related
      ENSPTRP00000054448.2, ENSPTRT00000061904.2

    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      38476263..38532876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063811920.1 → XP_063667990.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    2. XM_063811917.1 → XP_063667987.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    3. XM_063811918.1 → XP_063667988.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    4. XM_063811921.1 → XP_063667991.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    5. XM_063811926.1 → XP_063667996.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    6. XM_063811922.1 → XP_063667992.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    7. XM_063811924.1 → XP_063667994.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    8. XM_063811919.1 → XP_063667989.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    9. XM_063811925.1 → XP_063667995.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7

    10. XM_063811923.1 → XP_063667993.1  major histocompatibility complex, class II, DQ beta 1 isoform X1

      UniProtKB/TrEMBL
      H2RAS7
    Nucleotide Protein
    Heading Accession and Version

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