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    TVAGG3_0120600 RNA cap binding [ Trichomonas vaginalis G3 ]

    Gene ID: 4761005, updated on 17-May-2024

    Summary

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    Gene symbol
    TVAGG3_0120600
    Gene description
    RNA cap binding
    Locus tag
    TVAGG3_0120600
    See related
    TrichDB:TVAGG3_0120600; VEuPathDB:TVAGG3_0120600
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trichomonas vaginalis G3 (strain: G3, nat-host: Homo sapiens, culture-collection: ATCC:PRA-98)
    Lineage
    Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas
    Old locus tag
    TVAG_2v0120600
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    Genomic context

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    See TVAGG3_0120600 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_067206.1 (18327825..18328377)

    Chromosome IV - NC_067206.1Genomic Context describing neighboring genes Neighboring gene protein of unknown function (DUF3447) Neighboring gene TBP aldolase IIB domain protein domain-containing protein Neighboring gene hypothetical protein Neighboring gene ribonuclease H-like family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067206.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Carlton JM, et al. Science, 2007 Jan 12. PMID 17218520, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear cap binding complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA cap binding
    XP_001315386.1
    • Deepfry function prediction from predicted structure:RNA binding protein;eggNOG seed ortholog:5722.XP_001315386.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_067206.1 Reference assembly

      Range
      18327825..18328377
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001315351.1 → XP_001315386.1  RNA cap binding [Trichomonas vaginalis G3]

      See identical proteins and their annotated locations for XP_001315386.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A2EW15
      Conserved Domains (2) summary
      COG0724
      Location:1 → 135
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12240
      Location:40 → 117
      RRM_NCBP2; RNA recognition motif found in nuclear cap-binding protein subunit 2 (CBP20) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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